Imaging & OMICS
The Imaging & OMICS group focuses on developing methods to link clinical imaging data to high-dimensional molecular data across different spatial scales to produce new insights about structure and function of tissues.
Our aim is to discover associations between imaging data, and single-cell and multiplexed spatial observations. We develop computational algorithms and data visualization technologies to cross-link imaging data and high-throughput “omics” data through spatially-localized molecular data, such as atlases of the Allen Institute for Brain Science. We specialize in highly interactive, low-latency dimensionality reduction methods for on-the-fly visual analytics, in close collaboration with Delft University of Technology, in the context of Medical Delta program “AI for Computational Life Science”.
Current projects and software:
- Brainscapes (NWO Gravitation 2019)
- Visual Analytics from single cell to tissue (NWO AES)
- Human Mammalian Brain Atlas (NIH BICAN)
- Next Generation Immunodermatology (NWO ORC)
- ManiVault
- Cytosplore & Cytosplore Viewer
- SpaceWalker
- BrainScope
Publications
Our Team members
- Boudewijn P.F. Lelieveldt, Team lead
- Baldur van Lew, Scientific Software Engineer
- Jeroen Eggermont, Senior researcher
- Thomas Kroes, Scientific Software Engineer
- Julian Thijssen, Scientific Software Engineer
- Alexander Vieth, PhD student (TUD + LUMC)
- Chang Li, PhD student
- Soumyadeep Basu, PhD student (LUMC + TUD)
- Thomas Höllt, Assistant Professor, guest faculty from TU Delft